๐Ÿ„ Microbiology ยท Fungi & Parasites

Memory tricks for fungi and parasites

Candida, Aspergillus, Cryptococcus, antifungals, malaria, Toxoplasma, helminths, and vector-borne diseases โ€” mycology and parasitology simplified.

๐Ÿ„ Fungi & Parasites

Memory Tricks

Proven Mnemonics & Acronyms โ€” fast to learn, hard to forget.

๐Ÿ„ Fungi & Parasites
Candida: normal flora that overgrows when defenses drop โ€” "thrush, diaper rash, or systemic if immunocompromised"
Candida albicans โ€” opportunistic yeast; normal oral/GI/vaginal flora that overgrows with antibiotics, immunosuppression, or diabetes
The most common opportunistic fungal pathogen โ€” already living in you
Pseudohyphae on microscopy. Oral thrush (white plaques). Vulvovaginal: cottage cheese discharge, pruritus. Invasive candidemia: ICU patients with central lines โ€” risk with broad-spectrum antibiotics, TPN, immunosuppression. Treat: fluconazole (mild-moderate), echinocandin (invasive/azole-resistant).
๐Ÿ„ Fungi ยท Molds
Aspergillus: "Septate hyphae at 45ยฐ." Invasive in neutropenic. Aspergilloma = fungus ball in old TB cavities.
Aspergillus fumigatus โ€” ubiquitous mold; invasive disease in neutropenic/immunocompromised patients; classic halo sign on CT chest
The mold that kills immunocompromised patients โ€” three clinical presentations
ABPA (allergic bronchopulmonary aspergillosis): asthma/CF patients โ€” IgE-mediated reaction. Aspergilloma: fungus ball colonizes pre-existing cavity (TB cavities, sarcoidosis). Invasive aspergillosis: neutropenic patients (AML, transplant) โ†’ angioinvasion โ†’ hemorrhagic infarcts โ€” halo sign on CT. Treat invasive: voriconazole (first-line), amphotericin B.
๐Ÿ„ Fungi ยท AIDS
Cryptococcus: "Soap bubbles in brain." India ink stain shows capsule. Meningitis in AIDS (CD4 <100).
Cryptococcus neoformans โ€” encapsulated yeast from pigeon droppings; causes meningitis in AIDS patients with CD4 <100
The encapsulated yeast causing the most common AIDS-related meningitis
Found in pigeon droppings and soil. Large polysaccharide capsule = antiphagocytic. India ink: clear halo around yeast. Latex agglutination: detects capsular antigen in CSF (most sensitive). CSF: India ink+, very high opening pressure ("soap bubbles" on MRI). Treat: amphotericin B + flucytosine (induction 2 weeks), then fluconazole maintenance (lifelong in AIDS).
๐Ÿ„ Fungi ยท AIDS
PCP: AIDS-defining illness at CD4 <200. "Bat-wing infiltrates." TMP-SMX treats AND prevents.
Pneumocystis jirovecii Pneumonia โ€” now classified as fungus; AIDS-defining illness when CD4 <200; bilateral interstitial infiltrates
The AIDS-defining lung infection โ€” bilateral infiltrates + high LDH
Cannot be cultured โ€” diagnose by BAL + GMS (Gomori methenamine silver) stain showing cysts. Presentation: progressive dyspnea, dry cough, fever, hypoxia. CXR: bilateral interstitial infiltrates (bat wings). High LDH. Treat: TMP-SMX high dose ร— 21 days. Add steroids if PaOโ‚‚ <70 mmHg. Prophylaxis with TMP-SMX when CD4 <200.
๐Ÿ„ Parasites ยท Protozoa
Malaria: mosquito โ†’ sporozoites โ†’ liver โ†’ merozoites โ†’ RBCs โ†’ rupture โ†’ fever spikes
Plasmodium Life Cycle โ€” Anopheles mosquito injects sporozoites โ†’ exoerythrocytic liver phase โ†’ erythrocytic RBC phase โ†’ symptoms on RBC rupture
The two-host life cycle that explains malaria symptoms and drug targets
P. falciparum: most severe โ€” cytoadherence, cerebral malaria, no hypnozoites. P. vivax/ovale: tertian fever (48 hr), hypnozoites in liver โ†’ relapse โ€” add primaquine. P. malariae: quartan (72 hr). Blood stage treatment: chloroquine (sensitive), artemisinin (resistant). Cerebral malaria: IV artesunate.
๐Ÿ„ Parasites ยท Helminths
NTC: Nematodes (roundworms) ยท Trematodes (flukes) ยท Cestodes (tapeworms)
Helminth Classification โ€” N=Nematodes (roundworms) ยท T=Trematodes (flatworms/flukes) ยท C=Cestodes (tapeworms)
Three major worm categories โ€” each with distinctive biology and treatment
Nematodes: Ascaris (Loeffler syndrome), hookworm (iron-deficiency anemia), Strongyloides (autoinfection in immunocompromised), pinworm (scotch tape test), Trichinella (undercooked pork). Trematodes: Schistosoma (freshwater snail, hematuria or portal hypertension), liver flukes. Cestodes: T. solium (neurocysticercosis), Echinococcus (hydatid cysts). Treat: albendazole/mebendazole (most); praziquantel (schistosomiasis, tapeworms).
N โ€” Nematodes
Roundworms โ€” Ascaris, hookworm, Strongyloides, pinworm, Trichinella; treat with albendazole
T โ€” Trematodes
Flukes โ€” Schistosoma (water), liver flukes (undercooked fish); treat with praziquantel
C โ€” Cestodes
Tapeworms โ€” T. solium (neurocysticercosis), Echinococcus (hydatid cysts); praziquantel or surgery
๐Ÿ„ Fungi ยท Skin
Tinea = dermatophyte ringworm. Named by body location: capitis (scalp) ยท pedis (foot) ยท cruris (groin) ยท unguium (nails)
Dermatophyte Infections โ€” three genera (Trichophyton, Microsporum, Epidermophyton) cause superficial fungal infections of keratinized tissue
Same organisms, different location names โ€” know the treatment by site
KOH prep: hyphae visible on scraping. Tinea pedis (athlete's foot): most common โ€” interdigital. Tinea unguium (onychomycosis): yellow thickened nails โ€” treat with oral terbinafine. Tinea capitis in children: treat systemically (griseofulvin or terbinafine โ€” topicals don't penetrate hair follicle). Tinea corporis/cruris: topical clotrimazole/miconazole sufficient.
๐Ÿ„ Parasites ยท Protozoa
Toxoplasma: "cats + pregnant women + AIDS." Ring-enhancing brain lesions. Reactivation at CD4 <100.
Toxoplasma gondii โ€” definitive host is cats (oocysts in feces); causes congenital disease and CNS reactivation in AIDS
Harmless in healthy adults โ€” devastating in pregnancy and AIDS
Transmission: cat feces (oocysts) or undercooked meat (tissue cysts). Congenital: chorioretinitis, hydrocephalus, intracranial calcifications ("C-H-I-C"). AIDS reactivation (CD4 <100): encephalitis, ring-enhancing lesions on MRI. Treat: pyrimethamine + sulfadiazine + leucovorin. Prophylaxis: TMP-SMX when CD4 <100.
๐Ÿ„ Parasites ยท Protozoa
Giardia: "backpacker's diarrhea." Trophozoite = two nuclei = "owl eyes." Foul fatty stool = malabsorption.
Giardia lamblia โ€” fecal-oral via contaminated water; trophozoites attach to small intestine mucosa โ†’ malabsorption; treat with metronidazole
Most common intestinal parasitic infection in the US โ€” foul-smelling fatty diarrhea
Cysts in contaminated water (streams, lakes โ€” resistant to chlorine). Trophozoites attach to small intestine via ventral disc โ†’ malabsorption. Symptoms: foul-smelling fatty diarrhea (steatorrhea), bloating, no blood/mucus. Diagnosis: stool O&P, antigen test. Treat: metronidazole or tinidazole.
๐Ÿ„ Fungi ยท Dimorphic
Dimorphic fungi: "Mold in cold, yeast in heat." Temperature-dependent โ€” mold at room temp, yeast at body temp.
Dimorphic Fungi โ€” grow as mold at room temperature (25ยฐC) and switch to yeast at body temperature (37ยฐC)
Fungi that change form to evade immune defenses at body temperature
Histoplasma capsulatum: Ohio/Mississippi river valleys, bird/bat droppings. Blastomyces: North America, Great Lakes, skin lesions + lung. Coccidioides: Southwest US (California, Arizona), spherules. Paracoccidioides: South America. All: inhale spores โ†’ convert to yeast at 37ยฐC โ†’ pneumonia. Treat: itraconazole (mild-moderate), amphotericin B (severe/CNS).
๐Ÿ„ Parasites ยท Protozoa
Entamoeba histolytica: "flask-shaped ulcers" + liver abscess. Bloody diarrhea + RUQ pain. Anchovy paste pus.
Entamoeba histolytica โ€” fecal-oral; invades colonic mucosa causing bloody diarrhea; can disseminate to liver (amoebic abscess)
The amoeba that causes bloody diarrhea and liver abscesses
Fecal-oral, contaminated water, endemic in developing countries. Trophozoites invade colonic mucosa โ†’ flask-shaped ulcers โ†’ bloody diarrhea (dysentery). Amoebic liver abscess: RUQ pain, fever, no jaundice, "anchovy paste" pus (sterile). Diagnosis: serology + stool O&P. Treat: metronidazole + luminal agent (paromomycin or iodoquinol).
๐Ÿ„ Parasites ยท Ectoparasites
Scabies: "burrows" between fingers. Sarcoptes scabiei mite. Intense nocturnal pruritus. Treat entire household.
Scabies โ€” Sarcoptes scabiei mite burrows in stratum corneum; Type IV hypersensitivity reaction causes intense itching; treat with permethrin
The mite that causes intense itching โ€” and why you must treat the whole household
Sarcoptes scabiei burrows in stratum corneum โ€” especially between fingers, wrists, genitals. Intense pruritus (worse at night) โ€” delayed-type hypersensitivity to mite proteins. Diagnosis: scraping + mineral oil โ†’ mites/eggs under microscope. Treat: topical permethrin (entire body from neck down); treat all household contacts simultaneously; wash all bedding.
🎓 Common Exam Questions
Q: What is the NTC helminth classification and give two clinical examples per category with treatments?
A: Nematodes (roundworms): Ascaris lumbricoides (fecal-oral, Loeffler syndrome during lung migration, intestinal obstruction), Hookworm (percutaneous penetration, iron-deficiency anemia), Strongyloides (autoinfection in immunocompromised โ€” hyperinfection syndrome), Pinworm/Enterobius (scotch tape test), Trichinella (undercooked pork โ†’ muscle cysts). Treat with albendazole or mebendazole. Trematodes (flukes): Schistosoma (freshwater snail, S. haematobium โ†’ hematuria, S. mansoni โ†’ portal hypertension), Liver flukes (Clonorchis โ€” raw fish, cholangiocarcinoma risk). Treat with praziquantel. Cestodes (tapeworms): Taenia solium (undercooked pork, neurocysticercosis โ€” ring-enhancing lesions), Echinococcus granulosus (dogs, hydatid cysts in liver). Treat with praziquantel or surgery.
Q: Describe PCP โ€” who gets it, presentation, diagnosis, and treatment.
A: Pneumocystis jirovecii Pneumonia โ€” AIDS-defining illness when CD4 <200. P. jirovecii was once thought to be a protozoan but is now classified as a fungus. Cannot be cultured in vitro โ€” diagnose by BAL (bronchoalveolar lavage) with GMS (Gomori methenamine silver) stain showing cup-shaped cysts or DFA staining. Presentation: progressive dyspnea over days-weeks, non-productive cough, fever, hypoxia (often out of proportion to CXR findings). CXR: bilateral diffuse interstitial infiltrates (bat-wing pattern). Labs: elevated LDH (marker of disease severity and response). Treatment: TMP-SMX (high dose) ร— 21 days. Add corticosteroids if PaOโ‚‚ <70 mmHg or A-a gradient >35 (reduces inflammation and improves survival). Prophylaxis: TMP-SMX 1 DS tablet daily when CD4 <200.
Q: What are the dimorphic fungi and where are they geographically endemic?
A: All dimorphic fungi: mold at 25ยฐC (room temp), yeast at 37ยฐC (body temp). Histoplasma capsulatum: Ohio and Mississippi River valleys; bird and bat droppings (cleaning chicken coops, spelunking). Causes pneumonia resembling TB; disseminates in AIDS. Blastomyces dermatitidis: North America, Great Lakes region; causes lung + skin (verrucous lesions) + bone infection. Coccidioides immitis: Southwest US (California, Arizona desert); spherules (not yeast) with endospores. Valley fever โ€” flu-like illness, erythema nodosum. Most dangerous in HIV/pregnancy. Paracoccidioides brasiliensis: South America; "pilot's wheel" yeast appearance. All treated with itraconazole (mild-moderate) or amphotericin B (severe/disseminated).
Q: Describe the Plasmodium malaria life cycle and what distinguishes the four main species.
A: Anopheles mosquito injects sporozoites โ†’ liver (exoerythrocytic, clinically silent 1โ€“4 weeks). Merozoites released โ†’ infect RBCs โ†’ trophozoites โ†’ schizonts โ†’ RBC rupture releases merozoites โ†’ fever spike coincides with rupture. P. falciparum: no dormant stage (no hypnozoites), infects all RBC ages, cytoadherence to capillaries โ†’ cerebral malaria, blackwater fever, most deadly. P. vivax/ovale: tertian fever (rupture every 48 hr), prefer reticulocytes, form hypnozoites in liver โ†’ relapse months later โ†’ must add primaquine to eradicate liver stage. P. malariae: quartan fever (72 hr cycle), prefers older RBCs, nephrotic syndrome complication. Treatment: chloroquine (chloroquine-sensitive areas), artemisinin-based combination therapy (ACT for falciparum), IV artesunate (severe/cerebral).
Q: What are the Toxoplasma transmission routes and clinical dangers in each at-risk population?
A: Transmission: (1) Cat feces โ€” definitive host; oocysts sporulate in environment; ingestion contaminates food/water. (2) Undercooked meat (lamb, pork) containing tissue cysts. Healthy adults: usually asymptomatic, may have mono-like illness. At-risk populations: Pregnant women (primary infection during pregnancy) โ†’ congenital toxoplasmosis: classic triad = chorioretinitis + hydrocephalus + intracranial calcifications (periventricular); may also cause spontaneous abortion. AIDS patients (CD4 <100): reactivation of latent cysts โ†’ Toxoplasma encephalitis; ring-enhancing lesions on MRI with surrounding edema; multiple lesions usually at gray-white junction. Treatment: pyrimethamine + sulfadiazine + leucovorin (folinic acid prevents bone marrow suppression). Prophylaxis: TMP-SMX (also covers PCP) when CD4 <100.